STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_520Pro-zeta-carotene desaturase, prolycopene producing; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. (479 aa)    
Predicted Functional Partners:
NSP_37110
Carotenoid cis-trans isomerase; Nsp37110; ORF_ID:nsp37110.
  
  
 0.930
NSP_24490
Phytoene synthase; Nsp24490; ORF_ID:nsp24490.
  
 0.868
NSP_510
Oligoketide cyclase/lipid transport protein-like protein; Nsp510; ORF_ID:nsp510.
 
     0.861
NSP_35420
Lycopene cyclase, CruP type; Nsp35420; ORF_ID:nsp35420.
  
  
 0.823
NSP_11050
Conserved NnrU/NnuR membrane enzyme; Nsp11050; ORF_ID:nsp11050.
  
     0.773
NSP_14310
Photosystem II manganese-stabilizing protein (PsbO); Nsp14310; ORF_ID:nsp14310.
  
     0.772
psb27
Photosystem II protein Psb27; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.767
NSP_6560
Alpha/beta superfamily hydrolase; Nsp6560; ORF_ID:nsp6560.
  
     0.765
NSP_36850
Branched-chain amino acid permease; Nsp36850; ORF_ID:nsp36850.
  
     0.762
NSP_17980
Hypothetical protein; Nsp17980; ORF_ID:nsp17980.
  
     0.755
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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