STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_8160Phenazine biosynthesis protein PhzF; Nsp8160; ORF_ID:nsp8160. (265 aa)    
Predicted Functional Partners:
NSP_8150
Hypothetical protein; Nsp8150; ORF_ID:nsp8150.
       0.598
NSP_8170
Xaa-Pro aminopeptidase; Nsp8170; ORF_ID:nsp8170; Belongs to the peptidase M24B family.
  
    0.556
NSP_14950
Nsp14950; ORF_ID:nsp14950.
  
  
 0.531
NSP_52410
Anthranilate synthase, aminase component / Anthranilate synthase, amidotransferase component; Nsp52410; ORF_ID:nsp52410.
  
  
 0.531
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.519
NSP_13460
Steroid delta-5-3-ketosteroid isomerase; Nsp13460; ORF_ID:nsp13460.
  
 
  0.422
NSP_16500
Hypothetical protein; Nsp16500; ORF_ID:nsp16500.
  
 
  0.422
NSP_47040
Hypothetical protein; Nsp47040; ORF_ID:nsp47040.
  
 
  0.422
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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