STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_8410Lipase family protein, sll1969-like protein; Nsp8410; ORF_ID:nsp8410. (196 aa)    
Predicted Functional Partners:
NSP_50530
Long-chain-fatty-acid--CoA ligase; Nsp50530; ORF_ID:nsp50530.
    
  0.799
NSP_26720
Malonyl CoA-acyl carrier protein transacylase; Nsp26720; ORF_ID:nsp26720.
     
 0.763
NSP_13300
Peptide methionine sulfoxide reductase MsrB; Nsp13300; ORF_ID:nsp13300.
    
   0.685
rplU
LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.685
rpmA
LSU ribosomal protein L27p; Nsp16350; ORF_ID:nsp16350; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.685
rpsI
SSU ribosomal protein S9p (S16e); Nsp43550; ORF_ID:nsp43550; Belongs to the universal ribosomal protein uS9 family.
    
   0.685
rplQ
LSU ribosomal protein L17p; Nsp43580; ORF_ID:nsp43580.
    
   0.685
rpmJ
LSU ribosomal protein L36p; Nsp43620; ORF_ID:nsp43620; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.685
rplT
LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.685
rpsP
SSU ribosomal protein S16p; Nsp8200; ORF_ID:nsp8200; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.685
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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