STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM27756.1Hypothetical protein; COG2346 Truncated hemoglobins. (136 aa)    
Predicted Functional Partners:
EDM27755.1
Ribosomal large subunit pseudouridine synthase, RluD subfamily protein; COG0564 Pseudouridylate synthases, 23S RNA-specific.
   
   0.756
EDM29697.1
Hypothetical protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).
    
  0.613
EDM27757.1
Zinc finger protein; COG4338 Uncharacterized protein conserved in bacteria.
       0.610
EDM27758.1
Probable helicase protein; COG1199 Rad3-related DNA helicases.
       0.610
EDM27759.1
Hypothetical protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
       0.610
EDM27802.1
Zinc carboxypeptidase-related protein.
  
     0.538
EDM27166.1
ATP-binding region, ATPase-like protein; COG0642 Signal transduction histidine kinase.
    
  0.437
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.