STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM27879.1Hypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (634 aa)    
Predicted Functional Partners:
EDM28707.1
COG0404 Glycine cleavage system T protein (aminomethyltransferase).
  
 0.901
EDM29520.1
COG0067 Glutamate synthase domain 1.
  
 
 0.794
EDM26716.1
COG0067 Glutamate synthase domain 1.
  
 
 0.794
EDM27986.1
D-lactate dehydrogenase, putative; COG0277 FAD/FMN-containing dehydrogenases.
 
  
 0.734
EDM29091.1
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
 
  
 0.729
EDM29375.1
COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain.
   
 
 0.722
EDM26093.1
COG3022 Uncharacterized protein conserved in bacteria; Belongs to the UPF0246 family.
 
     0.721
EDM29361.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.721
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.704
EDM27663.1
FAD linked oxidase-like protein; COG0277 FAD/FMN-containing dehydrogenases.
    
 0.699
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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