STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25825.1Biopolymer transport protein, ExbD/TolR family; COG0848 Biopolymer transport protein. (155 aa)    
Predicted Functional Partners:
EDM25824.1
COG0811 Biopolymer transport proteins.
  
   0.889
EDM25826.1
Glucose-inhibited division protein A.
       0.773
EDM26507.1
Putative TonB2 protein; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.697
EDM25823.1
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
       0.586
EDM25827.1
Hypothetical protein.
       0.572
hemC
Prolyl 4-hydroxylase, alpha subunit; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
       0.553
EDM25304.1
COG0811 Biopolymer transport proteins.
   
   0.532
EDM26483.1
COG0811 Biopolymer transport proteins.
   
   0.532
EDM26509.1
MotA/TolQ/ExbB proton channel; COG0811 Biopolymer transport proteins.
   
   0.532
EDM26510.1
Transport protein TolQ-like protein; COG1196 Chromosome segregation ATPases.
   
   0.532
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.