STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25841.1COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (231 aa)    
Predicted Functional Partners:
EDM25184.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 0.852
EDM28255.1
Polyketide synthesis protein; COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
 0.806
EDM25842.1
COG0778 Nitroreductase.
  
   0.787
EDM25077.1
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family protein; COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.709
EDM27777.1
2-acyl-glycerophospho-ethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.
  
 0.703
EDM29520.1
COG0067 Glutamate synthase domain 1.
     
 0.689
EDM26716.1
COG0067 Glutamate synthase domain 1.
     
 0.689
accD
acetyl-coA carboxylase carboxyl transferase subunit beta/alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
 
 0.669
EDM28184.1
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases.
  
 0.649
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
  
 0.649
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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