STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25845.1Peptidase S1C, Do; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. (461 aa)    
Predicted Functional Partners:
EDM25328.1
Peptidase S1C, Do; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
     0.699
EDM25756.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.698
secD
Protein-export membrane protein SECD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
   
 
 0.644
EDM25843.1
COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.
 
 
   0.634
EDM25844.1
Heat shock protein, Hsp20 family; COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.
 
 
   0.624
EDM28615.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 0.584
EDM27170.1
COG0587 DNA polymerase III, alpha subunit.
    
  0.527
EDM24849.1
Hypothetical protein.
  
 
  0.514
EDM28966.1
Hypothetical protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
 
  0.430
EDM25841.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
   
  0.419
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.