STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25851.1Secretion protein HlyD; COG0845 Membrane-fusion protein. (353 aa)    
Predicted Functional Partners:
EDM25850.1
COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  0.901
EDM25350.1
Transmembrane ATP-binding ABC transporter protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
  
 
 0.879
EDM25849.1
COG1538 Outer membrane protein.
  
  0.878
EDM25848.1
Hypothetical protein.
       0.773
EDM25852.1
Transcriptional regulator, tetR family protein; COG1309 Transcriptional regulator.
       0.773
EDM27499.1
Hypothetical protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
  0.583
EDM27595.1
Hydrophobe/amphiphile efflux-1 family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
  0.583
EDM27795.1
Putative cation efflux system transmembrane protein; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
  0.539
EDM25115.1
Cation efflux system protein, AcrB/AcrD/AcrF family protein; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   
  0.539
EDM25846.1
Hypothetical protein.
       0.509
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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