STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM26537.1COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (179 aa)    
Predicted Functional Partners:
trpC
COG0134 Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
  
    0.784
EDM26536.1
Hypothetical protein.
       0.773
EDM26538.1
Hypothetical protein.
       0.773
EDM26540.1
Glycogen debranching enzyme/alpha-amylase; COG0366 Glycosidases.
       0.682
EDM26615.1
N-acetylmuramoyl-L-alanine amidase; COG3103 SH3 domain protein.
    
 0.631
EDM27773.1
COG1847 Predicted RNA-binding protein.
  
     0.428
EDM26541.1
Hypothetical protein.
       0.400
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.