STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25305.1GTP cyclohydrolase I; COG0848 Biopolymer transport protein. (138 aa)    
Predicted Functional Partners:
EDM25304.1
COG0811 Biopolymer transport proteins.
 
   0.970
EDM25824.1
COG0811 Biopolymer transport proteins.
  
   0.831
EDM26483.1
COG0811 Biopolymer transport proteins.
  
   0.823
EDM26509.1
MotA/TolQ/ExbB proton channel; COG0811 Biopolymer transport proteins.
  
   0.806
EDM26510.1
Transport protein TolQ-like protein; COG1196 Chromosome segregation ATPases.
  
   0.795
EDM25306.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
    0.774
EDM26507.1
Putative TonB2 protein; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.697
EDM26508.1
COG0848 Biopolymer transport protein.
  
     0.676
EDM28964.1
COG0811 Biopolymer transport proteins.
  
   0.668
cmoA
Putative methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM); Belongs to the class I-like SAM-binding methyltransferase superfamily. Cx-SAM synthase family.
   
   0.559
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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