STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM27398.1Probable ECF sigma factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)    
Predicted Functional Partners:
EDM26578.1
Hypothetical protein; COG1520 FOG: WD40-like repeat.
  
     0.651
EDM26777.1
Hypothetical protein.
  
     0.644
EDM28814.1
Putative large multi-functional protein; COG2133 Glucose/sorbosone dehydrogenases.
  
     0.613
EDM27072.1
Hypothetical protein; COG4099 Predicted peptidase.
  
     0.546
EDM29269.1
COG3828 Uncharacterized protein conserved in bacteria.
  
     0.546
EDM27097.1
Conserved hypothetical ATP-binding protein HP0066; COG0419 ATPase involved in DNA repair.
  
     0.545
EDM27396.1
COG2273 Beta-glucanase/Beta-glucan synthetase.
       0.506
EDM27397.1
Sulfatase; COG3119 Arylsulfatase A and related enzymes.
       0.506
EDM28419.1
Hypothetical protein.
  
     0.500
EDM28692.1
Probable vegetatible incompatibility protein HET-E-1.
  
     0.491
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.