STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM27409.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
EDM26365.1
Positive regulator of sigma-B activity; COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
 0.997
EDM26366.1
Indirect negative regulation of sigma B dependant gene expression (serine phosphatase); COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
  
 0.997
radC
DNA repair protein RadC; COG2198 FOG: HPt domain.
  
 
 0.890
EDM25123.1
Periplasmic Sensor Hybrid Histidine Kinase; COG0642 Signal transduction histidine kinase.
  
 
 0.867
EDM25580.1
Transcriptional regulator; COG0642 Signal transduction histidine kinase.
  
 
 0.867
EDM24922.1
COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; Belongs to the MlaE permease family.
   
  0.858
EDM27405.1
COG1040 Predicted amidophosphoribosyltransferases.
  
    0.782
EDM24921.1
COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
   
  0.754
EDM27166.1
ATP-binding region, ATPase-like protein; COG0642 Signal transduction histidine kinase.
  
 
 0.732
accD
acetyl-coA carboxylase carboxyl transferase subunit beta/alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
       0.727
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.