STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM24986.1Cytochrome c, class I; COG2863 Cytochrome c553. (196 aa)    
Predicted Functional Partners:
EDM24985.1
Putative transposase for insertion sequence isrm17; COG3039 Transposase and inactivated derivatives, IS5 family.
       0.762
EDM25293.1
COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
 
 
 0.627
EDM27233.1
Cytochrome c, class I; COG2863 Cytochrome c553.
 
  
0.602
EDM26422.1
Probable cytochrome c precursor; COG0542 ATPases with chaperone activity, ATP-binding subunit.
 
 
  0.533
EDM27747.1
Cytochrome c, class I; COG2863 Cytochrome c553.
 
    
0.492
EDM24773.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
    
 0.486
EDM26417.1
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
  
 
  0.469
EDM25403.1
Hypothetical protein; COG2133 Glucose/sorbosone dehydrogenases.
  
 
  0.469
EDM24984.1
Hypothetical protein.
       0.438
EDM24983.1
Hypothetical protein.
  
 
  0.426
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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