STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM28631.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
EDM26365.1
Positive regulator of sigma-B activity; COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
   
    0.964
EDM26366.1
Indirect negative regulation of sigma B dependant gene expression (serine phosphatase); COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
   
    0.964
EDM28630.1
Hypothetical protein.
       0.773
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 0.692
EDM27879.1
Hypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
 
  
  0.646
EDM26378.1
Phosphorylase kinase alpha subunit.
  
     0.642
radC
DNA repair protein RadC; COG2198 FOG: HPt domain.
  
 
 0.578
EDM25123.1
Periplasmic Sensor Hybrid Histidine Kinase; COG0642 Signal transduction histidine kinase.
  
    0.550
EDM25580.1
Transcriptional regulator; COG0642 Signal transduction histidine kinase.
  
    0.550
EDM28546.1
Isopropylmalate isomerase large subunit; COG2104 Sulfur transfer protein involved in thiamine biosynthesis.
  
 
  0.497
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.