STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM28675.1Transposase. (233 aa)    
Predicted Functional Partners:
EDM28674.1
COG0582 Integrase; Belongs to the 'phage' integrase family.
     0.823
EDM25662.1
Putative transposase, IS91 family protein; COG0072 Phenylalanyl-tRNA synthetase beta subunit.
 
     0.819
EDM28995.1
COG0784 FOG: CheY-like receiver.
   
 0.668
radC
DNA repair protein RadC; COG2198 FOG: HPt domain.
   
 0.663
EDM25123.1
Periplasmic Sensor Hybrid Histidine Kinase; COG0642 Signal transduction histidine kinase.
    
 0.608
EDM25580.1
Transcriptional regulator; COG0642 Signal transduction histidine kinase.
    
 0.608
EDM25839.1
Chorismate mutase/prephenate dehydratase; COG1605 Chorismate mutase.
     
 0.602
EDM26367.1
COG0642 Signal transduction histidine kinase.
    
 0.599
EDM29686.1
PAS/PAC sensor hybrid histidine kinase; COG0642 Signal transduction histidine kinase.
   
 0.597
EDM28676.1
Transposase; COG0072 Phenylalanyl-tRNA synthetase beta subunit.
       0.570
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.