STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM28764.1Predicted cytoplasmic sugar-binding protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (129 aa)    
Predicted Functional Partners:
EDM28143.1
Periplasmic binding protein/LacI transcriptional regulator; COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.931
EDM24994.1
Sugar (D-ribose) ABC transporter, periplasmic sugar-binding protein; COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.928
EDM28145.1
Probable sugar transporter permease protein; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  
 0.923
EDM25554.1
Sugar ABC transporter permease protein; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  
 0.921
EDM25553.1
Sugar ABC transporter ATP-binding protein; COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.891
EDM28144.1
COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.891
EDM28973.1
Putative PfkB family carbohydrate kinase; COG0524 Sugar kinases, ribokinase family.
 
  
 0.690
EDM24930.1
Carbohydrate kinase, PfkB family protein; COG0524 Sugar kinases, ribokinase family.
  
  
 0.619
EDM26463.1
Carbohydrate kinase, pfkB family protein; COG0524 Sugar kinases, ribokinase family.
  
  
 0.619
EDM28142.1
Fructokinase; COG0524 Sugar kinases, ribokinase family.
  
  
 0.619
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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