STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM28822.1Probable RNA polymerase sigma-H factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)    
Predicted Functional Partners:
EDM28823.1
COG0515 Serine/threonine protein kinase.
   
   0.784
EDM26578.1
Hypothetical protein; COG1520 FOG: WD40-like repeat.
  
     0.758
EDM26777.1
Hypothetical protein.
  
     0.739
EDM26670.1
Hypothetical protein.
  
     0.680
EDM28692.1
Probable vegetatible incompatibility protein HET-E-1.
  
     0.653
EDM28419.1
Hypothetical protein.
  
     0.617
EDM28607.1
Hypothetical protein.
  
   0.608
EDM27264.1
Peptidase S9, prolyl oligopeptidase active site region; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
     0.603
EDM25558.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.596
EDM25913.1
Probable RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.577
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.