STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25069.1Peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (549 aa)    
Predicted Functional Partners:
EDM28315.1
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
 
  0.982
EDM25184.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 0.956
EDM24936.1
COG0236 Acyl carrier protein.
 
 0.916
EDM25077.1
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family protein; COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 0.870
EDM24938.1
COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III.
  
 0.866
EDM25070.1
Ribose-phosphate pyrophosphokinase; COG0462 Phosphoribosylpyrophosphate synthetase.
    
  0.845
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.832
EDM28334.1
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
  0.804
EDM26372.1
COG2124 Cytochrome P450.
   
 0.787
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.770
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.