STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM28084.1COG3533 Uncharacterized protein conserved in bacteria. (632 aa)    
Predicted Functional Partners:
EDM28769.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.668
EDM28772.1
Hypothetical protein.
  
     0.665
EDM25393.1
Hypothetical protein.
  
     0.658
EDM27925.1
COG3669 Alpha-L-fucosidase.
  
     0.603
EDM27919.1
COG3669 Alpha-L-fucosidase.
  
     0.597
EDM26807.1
Probable glycosyl hydrolase; COG3669 Alpha-L-fucosidase.
  
     0.552
EDM29357.1
alpha-L-fucosidase precursor, putative; COG3669 Alpha-L-fucosidase.
  
     0.541
EDM27350.1
alpha-L-fucosidase precursor, putative; COG3669 Alpha-L-fucosidase.
  
     0.536
EDM25995.1
Hypothetical protein; COG3537 Putative alpha-1,2-mannosidase.
  
     0.521
EDM25807.1
Putative oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
  
     0.482
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.