STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM28188.1Hypothetical membrane protein; COG0419 ATPase involved in DNA repair. (614 aa)    
Predicted Functional Partners:
rsgA
Ribosome-associated GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.741
EDM29449.1
Probable RNA polymerase sigma-H factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.613
EDM24863.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.578
EDM26648.1
Hypothetical protein; COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit; Belongs to the cytochrome c-552 family.
  
     0.557
EDM26730.1
Hypothetical protein; COG0720 6-pyruvoyl-tetrahydropterin synthase.
  
     0.548
EDM28186.1
Hypothetical protein; COG2738 Predicted Zn-dependent protease.
       0.535
EDM26649.1
Hypothetical protein.
  
     0.510
EDM25107.1
Hypothetical protein.
  
     0.504
EDM25997.1
Probable RNA polymerase sigma-H factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.499
EDM26856.1
Probable RNA polymerase sigma-H factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.481
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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