STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25700.1Probable RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)    
Predicted Functional Partners:
EDM25699.1
Hypothetical protein; COG3712 Fe2+-dicitrate sensor, membrane component.
  
   0.795
EDM28607.1
Hypothetical protein.
  
   0.788
EDM29480.1
Hypothetical protein.
  
   0.780
EDM25427.1
Hypothetical protein.
  
     0.666
EDM29062.1
Hypothetical protein; COG3712 Fe2+-dicitrate sensor, membrane component.
  
   0.656
EDM26804.1
Hypothetical protein; COG2755 Lysophospholipase L1 and related esterases.
  
     0.603
EDM29569.1
Hypothetical protein.
  
     0.595
EDM26578.1
Hypothetical protein; COG1520 FOG: WD40-like repeat.
  
     0.591
EDM29326.1
Hypothetical protein.
  
     0.574
EDM25432.1
Probable RNA polymerase sigma-H factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.567
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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