STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnhARibonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family. (155 aa)    
Predicted Functional Partners:
EDM28912.1
COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
       0.777
EDM28909.1
Pilus biogenesis protein and ABC-type transporter; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
       0.773
EDM28910.1
Putative transcriptional regulator (LysR family) protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.773
EDM28913.1
Hypothetical protein.
       0.773
polA
DNA-directed DNA polymerase, DNA polymerase I protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.771
EDM28908.1
Hypothetical protein.
       0.762
EDM27170.1
COG0587 DNA polymerase III, alpha subunit.
  
 
 0.736
EDM26101.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.709
EDM26579.1
Oxidoreductase family, NAD-binding Rossmann fold domain protein; COG0673 Predicted dehydrogenases and related proteins.
 
      0.702
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.697
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.