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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM29021.1COG1509 Lysine 2,3-aminomutase. (341 aa)    
Predicted Functional Partners:
EDM29020.1
Regulatory protein, ArsR; COG0640 Predicted transcriptional regulators.
 
     0.803
EDM25524.1
lysyl-tRNA synthetase-related protein; COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II).
 
  
 0.795
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
    
 0.572
EDM29022.1
Transcriptional coactivator/pterin dehydratase; COG2154 Pterin-4a-carbinolamine dehydratase.
       0.540
EDM27792.1
Hypothetical protein; COG2452 Predicted site-specific integrase-resolvase.
    
  0.530
EDM27608.1
COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
 
  0.508
EDM25818.1
COG0527 Aspartokinases.
     
 0.476
EDM28940.1
COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
  
 
  0.429
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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