STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM29107.1Putative nitrogen-fixing protein NifU; COG0694 Thioredoxin-like proteins and domains. (189 aa)    
Predicted Functional Partners:
EDM29108.1
Hypothetical protein; Belongs to the HesB/IscA family.
  
 
 0.895
EDM29106.1
SUF system FeS assembly protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 
 0.884
EDM29103.1
Iron-regulated ABC transporter ATPase subunit SufC; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
     
 0.796
EDM29105.1
Cysteine desulphurase, SufS; COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.784
EDM29104.1
FeS assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
     
 0.781
EDM29101.1
Hypothetical protein; COG1959 Predicted transcriptional regulator.
  
  
 0.727
EDM29102.1
Component of SufBCD complex; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
     
 0.716
EDM24754.1
COG1145 Ferredoxin.
  
  
 0.692
EDM27322.1
Cytochrome-c protein; COG3474 Cytochrome c2.
  
    0.604
EDM28189.1
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit.
   
 
 0.596
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.