STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM27232.1Hypothetical protein; COG1774 Uncharacterized homolog of PSP1. (294 aa)    
Predicted Functional Partners:
rny
Hypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.836
EDM27231.1
Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
       0.773
EDM27228.1
Probable permease component of an ABC-transporter.
       0.705
EDM27229.1
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
       0.705
EDM27230.1
Hypothetical protein.
       0.705
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.649
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
    0.617
EDM25815.1
Putative Fe-S oxidoreductase; COG0621 2-methylthioadenine synthetase.
  
     0.456
EDM27233.1
Cytochrome c, class I; COG2863 Cytochrome c553.
       0.452
EDM27226.1
Hypothetical protein.
       0.419
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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