STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM26390.1Putative N-acetylneuraminate lyase (sialic acid lyase); COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase. (169 aa)    
Predicted Functional Partners:
EDM26391.1
COG4409 Neuraminidase (sialidase).
 
   
 0.898
EDM26389.1
COG4409 Neuraminidase (sialidase).
       0.773
EDM25839.1
Chorismate mutase/prephenate dehydratase; COG1605 Chorismate mutase.
  
  
 0.683
EDM29663.1
COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
    
 0.675
dapB
dapB; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
 
 0.649
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.627
EDM28351.1
Assimilatory nitrate reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
  0.620
EDM27986.1
D-lactate dehydrogenase, putative; COG0277 FAD/FMN-containing dehydrogenases.
   
 
  0.588
EDM27663.1
FAD linked oxidase-like protein; COG0277 FAD/FMN-containing dehydrogenases.
   
 
  0.588
EDM26394.1
Hypothetical protein.
 
     0.545
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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