STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM27640.1Hypothetical protein. (197 aa)    
Predicted Functional Partners:
EDM27641.1
NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
 
  0.787
EDM27638.1
Hypothetical protein.
  
  0.652
EDM27639.1
Hypothetical protein; COG0438 Glycosyltransferase.
      0.644
EDM27642.1
Hypothetical protein; COG0234 Co-chaperonin GroES (HSP10).
   
   0.594
EDM27741.1
Hypothetical protein; COG1073 Hydrolases of the alpha/beta superfamily.
    
   0.482
EDM26540.1
Glycogen debranching enzyme/alpha-amylase; COG0366 Glycosidases.
  
 0.468
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.442
EDM27637.1
COG0661 Predicted unusual protein kinase.
       0.433
EDM28053.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COG0836 Mannose-1-phosphate guanylyltransferase.
  
 
 0.414
EDM28054.1
COG0836 Mannose-1-phosphate guanylyltransferase.
  
 
 0.414
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.