STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM27655.1VCBS; COG2931 RTX toxins and related Ca2+-binding proteins. (4990 aa)    
Predicted Functional Partners:
EDM27656.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
 
0.840
EDM27658.1
Toxin secretion ATP-binding protein; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.636
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.618
EDM24730.1
Competence-damaged protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
     
 0.609
EDM27659.1
HlyD family secretion protein; COG0845 Membrane-fusion protein.
 
  
 0.556
EDM25703.1
Integrins alpha chain; COG2931 RTX toxins and related Ca2+-binding proteins.
  
 
  0.502
EDM27759.1
Hypothetical protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
   
 
 0.494
EDM29222.1
Iduronate-2-sulfatase; COG2931 RTX toxins and related Ca2+-binding proteins.
   
   0.475
EDM27657.1
Hypothetical protein.
       0.454
EDM27660.1
Type I secretion outer membrane protein, TolC; COG1538 Outer membrane protein.
 
    0.441
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.