STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM27298.1Transcriptional regulator, AraC/XylS family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (282 aa)    
Predicted Functional Partners:
EDM28312.1
Hypothetical protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
  
  0.798
EDM28532.1
Arabinose operon regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.775
EDM28723.1
Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.772
EDM27297.1
COG3345 Alpha-galactosidase.
 
     0.613
EDM28421.1
Xylose operon regulatory protein; COG1609 Transcriptional regulators.
  
     0.564
EDM27299.1
COG0431 Predicted flavoprotein.
       0.491
EDM26934.1
PurR protein; COG1609 Transcriptional regulators.
  
     0.473
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.408
EDM27296.1
Fumarate reductase/succinate dehydrogenase flavoprotein-like protein.
       0.405
EDM29174.1
COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
  
  
 
0.402
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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