EDM25497.1 protein (Lentisphaera araneosa) - STRING interaction network

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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Score

EDM25497.1

COG3547 Transposase and inactivated derivatives. (325 aa)

Predicted Functional Partners:

EDM28466.1

0.607

EDM25593.1

0.606

EDM28663.1

0.606

EDM28665.1

0.606

EDM29635.1

0.606

EDM27633.1

0.606

EDM29358.1

0.604

EDM25980.1

0.542

EDM25496.1

0.535

EDM29410.1

0.405

Your Current Organism:

Lentisphaera araneosa

NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM25496.1	EDM25497.1	LNTAR_23544	LNTAR_23549	Putative transposase for insertion sequence isrm17; COG3039 Transposase and inactivated derivatives, IS5 family.	COG3547 Transposase and inactivated derivatives.	0.535
EDM25497.1	EDM25496.1	LNTAR_23549	LNTAR_23544	COG3547 Transposase and inactivated derivatives.	Putative transposase for insertion sequence isrm17; COG3039 Transposase and inactivated derivatives, IS5 family.	0.535
EDM25497.1	EDM25593.1	LNTAR_23549	LNTAR_08221	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606
EDM25497.1	EDM25980.1	LNTAR_23549	LNTAR_19322	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.542
EDM25497.1	EDM27633.1	LNTAR_23549	LNTAR_20543	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606
EDM25497.1	EDM28466.1	LNTAR_23549	LNTAR_11136	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.607
EDM25497.1	EDM28663.1	LNTAR_23549	LNTAR_08839	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606
EDM25497.1	EDM28665.1	LNTAR_23549	LNTAR_08849	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606
EDM25497.1	EDM29358.1	LNTAR_23549	LNTAR_23249	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.604
EDM25497.1	EDM29410.1	LNTAR_23549	LNTAR_23509	COG3547 Transposase and inactivated derivatives.	Haem catalase/peroxidase; COG3547 Transposase and inactivated derivatives.	0.405
EDM25497.1	EDM29635.1	LNTAR_23549	LNTAR_17833	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606
EDM25593.1	EDM25497.1	LNTAR_08221	LNTAR_23549	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606
EDM25980.1	EDM25497.1	LNTAR_19322	LNTAR_23549	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.542
EDM27633.1	EDM25497.1	LNTAR_20543	LNTAR_23549	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606
EDM28466.1	EDM25497.1	LNTAR_11136	LNTAR_23549	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.607
EDM28663.1	EDM25497.1	LNTAR_08839	LNTAR_23549	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606
EDM28665.1	EDM25497.1	LNTAR_08849	LNTAR_23549	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606
EDM29358.1	EDM25497.1	LNTAR_23249	LNTAR_23549	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.604
EDM29410.1	EDM25497.1	LNTAR_23509	LNTAR_23549	Haem catalase/peroxidase; COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.405
EDM29635.1	EDM25497.1	LNTAR_17833	LNTAR_23549	COG3547 Transposase and inactivated derivatives.	COG3547 Transposase and inactivated derivatives.	0.606

Network Stats

number of nodes:

11

number of edges:

15

average node degree:

2.73

avg. local clustering coefficient:

0.843

expected number of edges:

11

PPI enrichment p-value:

0.121

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006779

Porphyrin-containing compound biosynthetic process

7 of 52

1.79

3.16

8.27e-09

GO:0006782

Protoporphyrinogen IX biosynthetic process

6 of 48

1.76

2.76

1.27e-07

GO:0019438

Aromatic compound biosynthetic process

8 of 279

1.12

1.33

1.47e-06

GO:0018130

Heterocycle biosynthetic process

8 of 302

1.09

1.25

2.50e-06

GO:1901362

Organic cyclic compound biosynthetic process

8 of 314

1.07

1.21

3.14e-06

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004853

Uroporphyrinogen decarboxylase activity

5 of 43

1.73

2.04

1.99e-05

GO:0003824

Catalytic activity

11 of 2412

0.32

0.24

0.0425

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

10 of 1549

0.47

0.35

0.0078

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2741

Mixed, incl. TGS domain, and Anaerobic coproporphyrinogen-III oxidase

4 of 5

2.57

3.07

1.64e-06

CL:5777

Uroporphyrinogen decarboxylase (URO-D), and Methionine synthase domain

5 of 51

1.66

1.9

3.11e-05

CL:5778

Uroporphyrinogen decarboxylase (URO-D), and Methionine synthase domain

4 of 46

1.6

1.46

0.00047

CL:5844

Mixed, incl. Methyltransferase MtaA/CmuA, and Methyltransferase complex

2 of 13

1.85

0.75

0.0372

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00860

Porphyrin and chlorophyll metabolism

5 of 108

1.33

1.29

0.00026

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01208

Uroporphyrinogen decarboxylase (URO-D)

5 of 41

1.75

2.1

1.49e-05

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR000257

Uroporphyrinogen decarboxylase (URO-D)

5 of 41

1.75

1.96

3.86e-05

IPR038071

UROD/MetE-like superfamily

5 of 47

1.69

1.9

3.86e-05

IPR034505

Anaerobic coproporphyrinogen-III oxidase

2 of 2

2.66

1.0

0.0152

IPR006360

Methyltransferase MtaA/CmuA

2 of 2

2.66

1.0

0.0152

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