STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25236.1Type 4 fimbrial biogenesis protein PilQ; COG3064 Membrane protein involved in colicin uptake; Belongs to the bacterial secretin family. (864 aa)    
Predicted Functional Partners:
EDM25237.1
Peptidase M41, FtsH; COG0457 FOG: TPR repeat; Belongs to the bacterial secretin family.
 
 
0.893
EDM25238.1
ComE; COG0419 ATPase involved in DNA repair; Belongs to the bacterial secretin family.
 
 
0.892
EDM26467.1
ABC transporter ATP-binding protein; COG1716 FOG: FHA domain.
  
 0.820
EDM25233.1
COG4972 Tfp pilus assembly protein, ATPase PilM.
 
  
 0.816
EDM25049.1
Two-component hybrid sensor and regulator; COG0784 FOG: CheY-like receiver.
  
 0.760
EDM28615.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 0.749
radC
DNA repair protein RadC; COG2198 FOG: HPt domain.
  
 0.746
EDM28995.1
COG0784 FOG: CheY-like receiver.
  
 0.735
EDM27166.1
ATP-binding region, ATPase-like protein; COG0642 Signal transduction histidine kinase.
  
 
 0.733
EDM26589.1
Sigma-54 dependent transcriptional regulator/response regulator; COG1716 FOG: FHA domain.
  
 0.730
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.