STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25618.1Extracellular solute-binding protein, family 7; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component. (358 aa)    
Predicted Functional Partners:
EDM25620.1
Putative C4-dicarboxylate transporter family protein, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
 
 0.995
EDM25619.1
C4-dicarboxylate transporter family protein, DctQ subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.951
EDM25615.1
COG0065 3-isopropylmalate dehydratase large subunit; Belongs to the aconitase/IPM isomerase family.
       0.443
EDM25616.1
COG0066 3-isopropylmalate dehydratase small subunit; Belongs to the LeuD family.
       0.443
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
       0.443
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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