STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25488.1COG3307 Lipid A core - O-antigen ligase and related enzymes. (553 aa)    
Predicted Functional Partners:
EDM27154.1
COG0307 Riboflavin synthase alpha chain.
    
  0.611
EDM29690.1
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; COG0807 GTP cyclohydrolase II.
    
  0.601
EDM29691.1
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; In the N-terminal section; belongs to the DHBP synthase family.
    
  0.601
EDM25346.1
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family.
    
  0.601
EDM27166.1
ATP-binding region, ATPase-like protein; COG0642 Signal transduction histidine kinase.
    
  0.600
EDM25490.1
COG1596 Periplasmic protein involved in polysaccharide export.
 
     0.540
EDM25486.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
       0.531
engB
Probable GTP binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.531
EDM25489.1
Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
       0.470
EDM29608.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases; Belongs to the peptidase S24 family.
  
     0.433
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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