STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM25490.1COG1596 Periplasmic protein involved in polysaccharide export. (283 aa)    
Predicted Functional Partners:
EDM25489.1
Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 0.990
EDM29510.1
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 0.966
EDM28042.1
COG1596 Periplasmic protein involved in polysaccharide export.
  
     0.726
EDM28043.1
COG1596 Periplasmic protein involved in polysaccharide export.
  
     0.712
EDM25491.1
Hypothetical protein; COG1452 Organic solvent tolerance protein OstA.
       0.568
EDM25492.1
Hypothetical protein.
       0.561
EDM25488.1
COG3307 Lipid A core - O-antigen ligase and related enzymes.
 
     0.540
EDM25315.1
Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
   
  0.498
EDM28029.1
COG3267 Type II secretory pathway, component ExeA (predicted ATPase).
  
     0.478
EDM25187.1
Polysaccharide biosynthesis domain protein; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
   
 
 0.470
Your Current Organism:
Lentisphaera araneosa
NCBI taxonomy Id: 313628
Other names: L. araneosa HTCC2155, Lentisphaera araneosa HTCC2155, Lentisphaera araneosa str. HTCC2155, Lentisphaera araneosa strain HTCC2155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.