STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ELI_07275Sensory box/GGDEF family protein; COG2199 FOG: GGDEF domain. (740 aa)    
Predicted Functional Partners:
ELI_07735
Two-component response regulator; COG0642 Signal transduction histidine kinase.
 
 
 0.868
ELI_11200
Hypothetical protein; COG2199 FOG: GGDEF domain.
 
 
 0.864
ELI_04180
Putative signal transduction histidine kinase with GAF domain; COG2203 FOG: GAF domain.
  
 
 0.765
ELI_11790
Hypothetical protein; COG2203 FOG: GAF domain.
 
 
 0.751
ELI_05110
Hypothetical protein; COG2200 FOG: EAL domain.
 
 
0.663
ELI_07280
Sensory box/GGDEF family protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 
0.642
ELI_03035
Putative diguanylate cyclase (GGDEF); COG2199 FOG: GGDEF domain.
 
0.596
ELI_07910
Response regulator; COG2199 FOG: GGDEF domain.
 
 
0.595
ELI_04755
Sensor histidine kinase; Has reversible, light-dependent DNA-binding activity. Upon illumination an internal FMN-protein adduct is formed which changes the protein conformation so that the previously sequestered DNA-binding domain is free to bind DNA. Binds to sequences within in its own promoter when illuminated but not when it has been incubated in the dark.
  
 
 0.538
ELI_07270
Putative secreted protein.
 
     0.516
Your Current Organism:
Erythrobacter litoralis
NCBI taxonomy Id: 314225
Other names: E. litoralis HTCC2594, Erythrobacter litoralis HTCC2594, Erythrobacter litoralis str. HTCC2594, Erythrobacter litoralis strain HTCC2594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.