STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ELI_13745COG0848 Biopolymer transport protein. (164 aa)    
Predicted Functional Partners:
ELI_13750
COG0811 Biopolymer transport proteins.
 
 
 0.939
ELI_13740
COG0848 Biopolymer transport protein.
 
     0.902
ELI_13755
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 
 0.857
ELI_13735
COG0848 Biopolymer transport protein.
 
     0.846
ELI_02180
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 
 0.724
ELI_09510
TonB protein.
 
 
 0.634
ELI_06335
Hypothetical protein; COG0457 FOG: TPR repeat.
 
 
   0.610
ELI_09530
TolQ, tolQ protein; COG0811 Biopolymer transport proteins.
  
 
 0.606
ELI_01645
COG2911 Uncharacterized protein conserved in bacteria.
  
     0.581
ELI_11170
Hypothetical protein.
  
 
 0.545
Your Current Organism:
Erythrobacter litoralis
NCBI taxonomy Id: 314225
Other names: E. litoralis HTCC2594, Erythrobacter litoralis HTCC2594, Erythrobacter litoralis str. HTCC2594, Erythrobacter litoralis strain HTCC2594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.