STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ76930.1Secretion system protein TadA; COG4962 Flp pilus assembly protein, ATPase CpaF. (441 aa)    
Predicted Functional Partners:
EAQ76929.1
COG4965 Flp pilus assembly protein TadB.
 
  
 0.961
EAQ76928.1
Probable secretion system protein TadC; COG2064 Flp pilus assembly protein TadC.
 
  
 0.937
EAQ76931.1
Probable pilus assembly protein CpaE; COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
 
  
 0.903
EAQ78169.1
COG4965 Flp pilus assembly protein TadB.
 
  
 0.891
EAQ80146.1
Putative membrane protein; COG4965 Flp pilus assembly protein TadB.
 
  
 0.887
EAQ76932.1
Putative outer membrane channel for pilus assembly CpaC; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
  
 0.882
EAQ76933.1
COG3745 Flp pilus assembly protein CpaB.
 
  
 0.881
EAQ78168.1
Probable integral membrane protein; COG2064 Flp pilus assembly protein TadC.
 
  
 0.866
EAQ80147.1
Bacterial type II secretion system protein; Probably involved in Flp pilus synthesis; COG2064 Flp pilus assembly protein TadC.
 
  
 0.861
EAQ78171.1
Response regulator; COG4963 Flp pilus assembly protein, ATPase CpaE.
 
  
 0.846
Your Current Organism:
Blastopirellula marina
NCBI taxonomy Id: 314230
Other names: B. marina DSM 3645, Blastopirellula marina DSM 3645, Blastopirellula marina str. DSM 3645, Blastopirellula marina strain DSM 3645
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.