STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ78427.1COG1538 Outer membrane protein. (798 aa)    
Predicted Functional Partners:
EAQ81967.1
Alkaline proteinase secretion protein aprE-like; COG0845 Membrane-fusion protein.
  
  0.779
EAQ77506.1
Hypothetical protein.
  
  
  0.764
EAQ77357.1
Probable AcrA/AcrE family protein-putative secreted protein; COG1566 Multidrug resistance efflux pump.
  
  0.750
EAQ80786.1
Hypothetical protein.
  
     0.742
EAQ82564.1
General secretory pathway protein D-like; COG1196 Chromosome segregation ATPases; Belongs to the bacterial secretin family.
 
    0.739
EAQ77358.1
Alkaline proteinase secretion protein aprE-like; COG0845 Membrane-fusion protein.
  
  0.734
EAQ79079.1
COG1538 Outer membrane protein.
  
     0.732
EAQ78869.1
Probable general secretion pathway protein K; COG3156 Type II secretory pathway, component PulK.
  
     0.712
EAQ82800.1
Hypothetical protein; COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component.
  
     0.707
EAQ80327.1
Hypothetical protein.
  
     0.699
Your Current Organism:
Blastopirellula marina
NCBI taxonomy Id: 314230
Other names: B. marina DSM 3645, Blastopirellula marina DSM 3645, Blastopirellula marina str. DSM 3645, Blastopirellula marina strain DSM 3645
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.