Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAQ82628.1 | EAQ82629.1 | DSM3645_09522 | DSM3645_09527 | Glucokinase; COG1940 Transcriptional regulator/sugar kinase. | Hypothetical protein; COG1413 FOG: HEAT repeat. | 0.562 |
EAQ82629.1 | EAQ82628.1 | DSM3645_09527 | DSM3645_09522 | Hypothetical protein; COG1413 FOG: HEAT repeat. | Glucokinase; COG1940 Transcriptional regulator/sugar kinase. | 0.562 |
EAQ82629.1 | efp | DSM3645_09527 | DSM3645_14065 | Hypothetical protein; COG1413 FOG: HEAT repeat. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.486 |
efp | EAQ82629.1 | DSM3645_14065 | DSM3645_09527 | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Hypothetical protein; COG1413 FOG: HEAT repeat. | 0.486 |