STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ80911.1Hypothetical protein; COG1145 Ferredoxin. (112 aa)    
Predicted Functional Partners:
EAQ80912.1
Hypothetical protein.
       0.535
EAQ80539.1
Oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
     0.529
EAQ77544.1
Hypothetical protein; COG2217 Cation transport ATPase.
 
   
 0.527
EAQ79238.1
Glutathione-dependent formaldehyde dehydrogenase; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
     0.523
EAQ80541.1
Hypothetical protein.
  
     0.417
EAQ80913.1
COG0500 SAM-dependent methyltransferases.
       0.409
EAQ80914.1
Hypothetical protein; COG2252 Permeases.
       0.409
Your Current Organism:
Blastopirellula marina
NCBI taxonomy Id: 314230
Other names: B. marina DSM 3645, Blastopirellula marina DSM 3645, Blastopirellula marina str. DSM 3645, Blastopirellula marina strain DSM 3645
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.