STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ79083.1Spectrin alpha chain-like protein; COG0419 ATPase involved in DNA repair. (858 aa)    
Predicted Functional Partners:
EAQ79084.1
Hypothetical protein; COG0362 6-phosphogluconate dehydrogenase.
       0.693
EAQ79085.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
 
     0.586
EAQ80004.1
Type IV fimbrial assembly protein PilC; COG1459 Type II secretory pathway, component PulF.
 
 
 
 0.569
EAQ79086.1
General secretion pathway protein G-like.
 
     0.479
EAQ79631.1
Type IV pilus biogenesis protein PilC; COG1459 Type II secretory pathway, component PulF.
 
 
 
 0.479
EAQ77870.1
General secretion pathway protein F-putative pilus protein; COG1459 Type II secretory pathway, component PulF.
 
 
 
 0.468
EAQ78875.1
Type 4 fimbrial assembly protein pilC; COG1459 Type II secretory pathway, component PulF.
 
 
 
 0.464
EAQ79677.1
Hypothetical protein.
  
 
 0.460
EAQ80005.1
Type IV fimbrial assembly protein PilB; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 
 0.407
EAQ80007.1
Type IV fimbrial assembly protein PilB; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 
 0.403
Your Current Organism:
Blastopirellula marina
NCBI taxonomy Id: 314230
Other names: B. marina DSM 3645, Blastopirellula marina DSM 3645, Blastopirellula marina str. DSM 3645, Blastopirellula marina strain DSM 3645
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.