STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ78078.1Probable multidrug resistance protein; COG0841 Cation/multidrug efflux pump. (78 aa)    
Predicted Functional Partners:
EAQ80528.1
COG0845 Membrane-fusion protein.
  
  
  0.548
EAQ80343.1
COG0342 Preprotein translocase subunit SecD.
   
 
 0.520
EAQ80543.1
COG4529 Uncharacterized protein conserved in bacteria.
  
     0.520
secD
Protein-export membrane protein secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
   
 
 0.520
EAQ80616.1
MchE protein-like; COG0845 Membrane-fusion protein.
  
  0.518
EAQ79251.1
MchE protein-like; COG0845 Membrane-fusion protein.
  
  0.506
EAQ78079.1
Extracytoplasmic sigma factor ECF-like protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
       0.494
EAQ78071.1
Hypothetical protein.
  
     0.454
EAQ80542.1
COG0019 Diaminopimelate decarboxylase.
  
     0.421
EAQ82162.1
Secretion protein HlyD; COG0845 Membrane-fusion protein.
   
  0.408
Your Current Organism:
Blastopirellula marina
NCBI taxonomy Id: 314230
Other names: B. marina DSM 3645, Blastopirellula marina DSM 3645, Blastopirellula marina str. DSM 3645, Blastopirellula marina strain DSM 3645
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.