STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyHypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (517 aa)    
Predicted Functional Partners:
ribBA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.916
EAQ80699.1
Signal peptidase-like protein; COG1774 Uncharacterized homolog of PSP1.
 
  
 0.760
EAQ81260.1
COG1692 Uncharacterized protein conserved in bacteria.
  
  
 0.726
EAQ77552.1
Poly A polymerase; COG0617 tRNA nucleotidyltransferase/poly(A) polymerase.
    
 0.540
EAQ78089.1
COG0608 Single-stranded DNA-specific exonuclease.
  
    0.508
EAQ81262.1
Hypothetical protein.
       0.496
EAQ82642.1
Molybdopterin biosynthesis protein MoeA; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
    
  0.479
EAQ81033.1
Hypothetical protein; COG0618 Exopolyphosphatase-related proteins.
 
   
 0.429
rpsO
Probable 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
  
 0.415
EAQ77434.1
COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase).
  
 
 0.413
Your Current Organism:
Blastopirellula marina
NCBI taxonomy Id: 314230
Other names: B. marina DSM 3645, Blastopirellula marina DSM 3645, Blastopirellula marina str. DSM 3645, Blastopirellula marina strain DSM 3645
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.