STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ77626.1COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. (573 aa)    
Predicted Functional Partners:
EAQ77624.1
HtrA; Similar to serine protease, trypsin family; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
 
  
 
0.932
EAQ77625.1
Serine proteinase, HtrA/DegQ/DegS family protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
 
  
 
0.931
EAQ77629.1
Hypothetical protein; COG0443 Molecular chaperone.
 
     0.879
EAQ77627.1
Hypothetical protein.
       0.808
EAQ77628.1
Hypothetical protein.
       0.808
EAQ80343.1
COG0342 Preprotein translocase subunit SecD.
  
 
 0.719
secD
Protein-export membrane protein secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.719
EAQ81886.1
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
  
 
0.654
EAQ77088.1
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
  
 
0.649
EAQ77630.1
Polyketide synthase-like protein; COG1196 Chromosome segregation ATPases.
  
    0.646
Your Current Organism:
Blastopirellula marina
NCBI taxonomy Id: 314230
Other names: B. marina DSM 3645, Blastopirellula marina DSM 3645, Blastopirellula marina str. DSM 3645, Blastopirellula marina strain DSM 3645
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