STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05311.1Hypothetical protein. (56 aa)    
Predicted Functional Partners:
EAQ06268.1
Hypothetical protein.
  
  
 0.627
EAQ06216.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
    0.595
EAQ06118.1
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
  
 0.578
EAQ06879.1
ADA regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
     
 0.544
EAQ07328.1
Competence protein; COG0658 Predicted membrane metal-binding protein.
  
  
 0.539
EAQ07502.1
Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.
  
  
 0.539
EAQ05312.1
COG3019 Predicted metal-binding protein.
       0.457
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
    
 
 0.454
EAQ07448.1
COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.413
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.