EAQ05314.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EAQ05314.1

COG2217 Cation transport ATPase. (777 aa)

Predicted Functional Partners:

EAQ05313.1

0.974

EAQ08007.1

0.916

EAQ05467.1

0.903

EAQ06947.1

0.896

ribB

0.891

EAQ06808.1

0.628

EAQ07889.1

0.602

EAQ05312.1

0.601

argG

0.598

EAQ05407.1

0.596

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05312.1	EAQ05313.1	SKA53_00010	SKA53_00015	COG3019 Predicted metal-binding protein.	Heavy metal transport/detoxification protein; COG2608 Copper chaperone.	0.412
EAQ05312.1	EAQ05314.1	SKA53_00010	SKA53_00020	COG3019 Predicted metal-binding protein.	COG2217 Cation transport ATPase.	0.601
EAQ05312.1	EAQ07889.1	SKA53_00010	SKA53_09204	COG3019 Predicted metal-binding protein.	COG0789 Predicted transcriptional regulators.	0.450
EAQ05313.1	EAQ05312.1	SKA53_00015	SKA53_00010	Heavy metal transport/detoxification protein; COG2608 Copper chaperone.	COG3019 Predicted metal-binding protein.	0.412
EAQ05313.1	EAQ05314.1	SKA53_00015	SKA53_00020	Heavy metal transport/detoxification protein; COG2608 Copper chaperone.	COG2217 Cation transport ATPase.	0.974
EAQ05313.1	EAQ07889.1	SKA53_00015	SKA53_09204	Heavy metal transport/detoxification protein; COG2608 Copper chaperone.	COG0789 Predicted transcriptional regulators.	0.497
EAQ05313.1	EAQ08007.1	SKA53_00015	SKA53_09794	Heavy metal transport/detoxification protein; COG2608 Copper chaperone.	COG2608 Copper chaperone.	0.741
EAQ05314.1	EAQ05312.1	SKA53_00020	SKA53_00010	COG2217 Cation transport ATPase.	COG3019 Predicted metal-binding protein.	0.601
EAQ05314.1	EAQ05313.1	SKA53_00020	SKA53_00015	COG2217 Cation transport ATPase.	Heavy metal transport/detoxification protein; COG2608 Copper chaperone.	0.974
EAQ05314.1	EAQ05407.1	SKA53_00020	SKA53_00485	COG2217 Cation transport ATPase.	Selenide, water dikinase, putative; COG1252 NADH dehydrogenase, FAD-containing subunit.	0.596
EAQ05314.1	EAQ05467.1	SKA53_00020	SKA53_03624	COG2217 Cation transport ATPase.	COG2124 Cytochrome P450.	0.903
EAQ05314.1	EAQ06808.1	SKA53_00020	SKA53_14711	COG2217 Cation transport ATPase.	Hypothetical protein; COG2514 Predicted ring-cleavage extradiol dioxygenase.	0.628
EAQ05314.1	EAQ06947.1	SKA53_00020	SKA53_15406	COG2217 Cation transport ATPase.	Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.	0.896
EAQ05314.1	EAQ07889.1	SKA53_00020	SKA53_09204	COG2217 Cation transport ATPase.	COG0789 Predicted transcriptional regulators.	0.602
EAQ05314.1	EAQ08007.1	SKA53_00020	SKA53_09794	COG2217 Cation transport ATPase.	COG2608 Copper chaperone.	0.916
EAQ05314.1	argG	SKA53_00020	SKA53_11798	COG2217 Cation transport ATPase.	COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.598
EAQ05314.1	ribB	SKA53_00020	SKA53_01971	COG2217 Cation transport ATPase.	Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.891
EAQ05407.1	EAQ05314.1	SKA53_00485	SKA53_00020	Selenide, water dikinase, putative; COG1252 NADH dehydrogenase, FAD-containing subunit.	COG2217 Cation transport ATPase.	0.596
EAQ05467.1	EAQ05314.1	SKA53_03624	SKA53_00020	COG2124 Cytochrome P450.	COG2217 Cation transport ATPase.	0.903
EAQ05467.1	EAQ06808.1	SKA53_03624	SKA53_14711	COG2124 Cytochrome P450.	Hypothetical protein; COG2514 Predicted ring-cleavage extradiol dioxygenase.	0.429