Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05331.1COG4126 Hydantoin racemase. (238 aa)    
Predicted Functional Partners:
EAQ05330.1
Dihydropyrimidinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
  
  0.920
EAQ05329.1
Asp/Glu racemase; COG3473 Maleate cis-trans isomerase.
 
     0.917
EAQ05336.1
ABC transporter substrate-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
     0.865
EAQ06022.1
Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase.
 
  
  0.825
EAQ08030.1
Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase.
 
  
  0.824
EAQ05332.1
Putative polysaccharide deacetylase; COG0726 Predicted xylanase/chitin deacetylase.
 
  
  0.813
EAQ05328.1
Putative extracellular solute-binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.803
EAQ05324.1
N-carbamyl-D-amino acid amidohydrolase; COG0388 Predicted amidohydrolase.
 
     0.731
EAQ05327.1
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.691
EAQ05323.1
ABC transporter substrate-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.633
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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