STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05332.1Putative polysaccharide deacetylase; COG0726 Predicted xylanase/chitin deacetylase. (293 aa)    
Predicted Functional Partners:
EAQ06021.1
COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
  0.844
EAQ05336.1
ABC transporter substrate-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
     0.842
EAQ06070.1
COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
  0.842
EAQ05331.1
COG4126 Hydantoin racemase.
 
  
  0.813
EAQ05333.1
ABC transporter permease protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
     0.801
EAQ08183.1
N-carbamoyl-L-amino acid amidohydrolase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
  
 0.798
EAQ05334.1
ABC transporter permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
       0.775
EAQ05335.1
Spermidine/putrescine ABC transporter, ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
       0.774
EAQ05330.1
Dihydropyrimidinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
    
  0.709
EAQ07042.1
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
     0.660
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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