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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05333.1ABC transporter permease protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II. (266 aa)    
Predicted Functional Partners:
EAQ05334.1
ABC transporter permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.993
EAQ05335.1
Spermidine/putrescine ABC transporter, ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 0.980
EAQ06314.1
ABC spermidine/putrescine transporter, inner membrane subunit; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.966
EAQ05336.1
ABC transporter substrate-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
     0.935
EAQ05741.1
Polyamine ABC transporter, permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.932
EAQ08242.1
COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.922
EAQ08240.1
Probable ATP-binding component of ABC transporter; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 0.895
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.891
EAQ08243.1
Probable binding protein component of ABC transporter; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 
 0.887
EAQ06316.1
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 0.880
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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